PhytophthoraV1, Main, Exploration, bibRecord, 000207

Fine mapping of a Phytophthora-resistance locus RpsGZ in soybean using genotyping-by-sequencing.

Identifieur interne : 000207 ( Main/Exploration ); précédent : 000206; suivant : 000208

Fine mapping of a Phytophthora-resistance locus RpsGZ in soybean using genotyping-by-sequencing.

Auteurs : Bingzhi Jiang [République populaire de Chine] ; Yanbo Cheng [République populaire de Chine] ; Zhandong Cai [République populaire de Chine] ; Mu Li [République populaire de Chine] ; Ze Jiang [République populaire de Chine] ; Ruirui Ma [République populaire de Chine] ; Yeshan Yuan [République populaire de Chine] ; Qiuju Xia [République populaire de Chine] ; Hai Nian [République populaire de Chine]

Source :

BMC genomics [ 1471-2164 ] ; 2020.

RBID : pubmed:32245402

Descripteurs français

KwdFr :
- Amélioration des plantes (MeSH), Analyse de séquence d'ADN (MeSH), Cartographie chromosomique (MeSH), Chromosomes de bactérie (génétique), Liaison génétique (MeSH), Maladies des plantes (parasitologie), Phytophthora (pathogénicité), Protéines végétales (génétique), Résistance à la maladie (MeSH), Soja (génétique), Soja (parasitologie), Séquençage nucléotidique à haut débit (MeSH).
MESH :
- génétique : Chromosomes de bactérie, Protéines végétales, Soja.
- parasitologie : Maladies des plantes, Soja.
- pathogénicité : Phytophthora.
- Amélioration des plantes, Analyse de séquence d'ADN, Cartographie chromosomique, Liaison génétique, Résistance à la maladie, Séquençage nucléotidique à haut débit.

English descriptors

KwdEn :
- Chromosome Mapping (MeSH), Chromosomes, Bacterial (genetics), Disease Resistance (MeSH), Genetic Linkage (MeSH), High-Throughput Nucleotide Sequencing (MeSH), Phytophthora (pathogenicity), Plant Breeding (MeSH), Plant Diseases (parasitology), Plant Proteins (genetics), Sequence Analysis, DNA (MeSH), Soybeans (genetics), Soybeans (parasitology).
MESH :
- chemical , genetics : Plant Proteins.
- genetics : Chromosomes, Bacterial, Soybeans.
- parasitology : Plant Diseases, Soybeans.
- pathogenicity : Phytophthora.
- Chromosome Mapping, Disease Resistance, Genetic Linkage, High-Throughput Nucleotide Sequencing, Plant Breeding, Sequence Analysis, DNA.

Abstract

BACKGROUND

Phytophthora root rot (PRR) caused by Phytophthora sojae (P. sojae) is one of the most serious limitations to soybean production worldwide. The identification of resistance gene(s) and their incorporation into elite varieties is an effective approach for breeding to prevent soybean from being harmed by this disease. A valuable mapping population of 228 F

RESULTS

PRR resistance in Guizao1 was found to be controlled by a single Mendelian locus and was finely mapped to a 367.371-kb genomic region on chromosome 3 harbouring 19 genes, including 7 disease resistance (R)-like genes, in the reference Willliams 82 genome. Quantitative real-time PCR assays of possible candidate genes revealed that Glyma.03 g05300 was likely involved in PRR resistance.

CONCLUSIONS

These findings from the fine mapping of a novel Rps locus will serve as a basis for the cloning and transfer of resistance genes in soybean and the breeding of P. sojae-resistant soybean cultivars through marker-assisted selection.

DOI: 10.1186/s12864-020-6668-z
PubMed: 32245402
PubMed Central: PMC7126358

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000229
to stream Main, to step Curation: 000229

Le document en format XML

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<author><name sortKey="Yuan, Yeshan" sort="Yuan, Yeshan" uniqKey="Yuan Y" first="Yeshan" last="Yuan">Yeshan Yuan</name>
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<author><name sortKey="Nian, Hai" sort="Nian, Hai" uniqKey="Nian H" first="Hai" last="Nian">Hai Nian</name>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Chromosome Mapping (MeSH)</term>
<term>Chromosomes, Bacterial (genetics)</term>
<term>Disease Resistance (MeSH)</term>
<term>Genetic Linkage (MeSH)</term>
<term>High-Throughput Nucleotide Sequencing (MeSH)</term>
<term>Phytophthora (pathogenicity)</term>
<term>Plant Breeding (MeSH)</term>
<term>Plant Diseases (parasitology)</term>
<term>Plant Proteins (genetics)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Soybeans (genetics)</term>
<term>Soybeans (parasitology)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Amélioration des plantes (MeSH)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Cartographie chromosomique (MeSH)</term>
<term>Chromosomes de bactérie (génétique)</term>
<term>Liaison génétique (MeSH)</term>
<term>Maladies des plantes (parasitologie)</term>
<term>Phytophthora (pathogénicité)</term>
<term>Protéines végétales (génétique)</term>
<term>Résistance à la maladie (MeSH)</term>
<term>Soja (génétique)</term>
<term>Soja (parasitologie)</term>
<term>Séquençage nucléotidique à haut débit (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Chromosomes, Bacterial</term>
<term>Soybeans</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Chromosomes de bactérie</term>
<term>Protéines végétales</term>
<term>Soja</term>
</keywords>
<keywords scheme="MESH" qualifier="parasitologie" xml:lang="fr"><term>Maladies des plantes</term>
<term>Soja</term>
</keywords>
<keywords scheme="MESH" qualifier="parasitology" xml:lang="en"><term>Plant Diseases</term>
<term>Soybeans</term>
</keywords>
<keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Phytophthora</term>
</keywords>
<keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr"><term>Phytophthora</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Chromosome Mapping</term>
<term>Disease Resistance</term>
<term>Genetic Linkage</term>
<term>High-Throughput Nucleotide Sequencing</term>
<term>Plant Breeding</term>
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Amélioration des plantes</term>
<term>Analyse de séquence d'ADN</term>
<term>Cartographie chromosomique</term>
<term>Liaison génétique</term>
<term>Résistance à la maladie</term>
<term>Séquençage nucléotidique à haut débit</term>
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<front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b>
</p>
<p>Phytophthora root rot (PRR) caused by Phytophthora sojae (P. sojae) is one of the most serious limitations to soybean production worldwide. The identification of resistance gene(s) and their incorporation into elite varieties is an effective approach for breeding to prevent soybean from being harmed by this disease. A valuable mapping population of 228 F</p>
</div>
<div type="abstract" xml:lang="en"><p><b>RESULTS</b>
</p>
<p>PRR resistance in Guizao1 was found to be controlled by a single Mendelian locus and was finely mapped to a 367.371-kb genomic region on chromosome 3 harbouring 19 genes, including 7 disease resistance (R)-like genes, in the reference Willliams 82 genome. Quantitative real-time PCR assays of possible candidate genes revealed that Glyma.03 g05300 was likely involved in PRR resistance.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b>
</p>
<p>These findings from the fine mapping of a novel Rps locus will serve as a basis for the cloning and transfer of resistance genes in soybean and the breeding of P. sojae-resistant soybean cultivars through marker-assisted selection.</p>
</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">32245402</PMID>
<DateCompleted><Year>2020</Year>
<Month>11</Month>
<Day>19</Day>
</DateCompleted>
<DateRevised><Year>2020</Year>
<Month>11</Month>
<Day>19</Day>
</DateRevised>
<Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2164</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>21</Volume>
<Issue>1</Issue>
<PubDate><Year>2020</Year>
<Month>Apr</Month>
<Day>03</Day>
</PubDate>
</JournalIssue>
<Title>BMC genomics</Title>
<ISOAbbreviation>BMC Genomics</ISOAbbreviation>
</Journal>
<ArticleTitle>Fine mapping of a Phytophthora-resistance locus RpsGZ in soybean using genotyping-by-sequencing.</ArticleTitle>
<Pagination><MedlinePgn>280</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1186/s12864-020-6668-z</ELocationID>
<Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Phytophthora root rot (PRR) caused by Phytophthora sojae (P. sojae) is one of the most serious limitations to soybean production worldwide. The identification of resistance gene(s) and their incorporation into elite varieties is an effective approach for breeding to prevent soybean from being harmed by this disease. A valuable mapping population of 228 F<sub>8:11</sub>
 recombinant inbred lines (RILs) derived from a cross of the resistant cultivar Guizao1 and the susceptible cultivar BRSMG68 and a high-density genetic linkage map with an average distance of 0.81 centimorgans (cM) between adjacent bin markers in this population were used to map and explore candidate gene(s).</AbstractText>
<AbstractText Label="RESULTS" NlmCategory="RESULTS">PRR resistance in Guizao1 was found to be controlled by a single Mendelian locus and was finely mapped to a 367.371-kb genomic region on chromosome 3 harbouring 19 genes, including 7 disease resistance (R)-like genes, in the reference Willliams 82 genome. Quantitative real-time PCR assays of possible candidate genes revealed that Glyma.03 g05300 was likely involved in PRR resistance.</AbstractText>
<AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">These findings from the fine mapping of a novel Rps locus will serve as a basis for the cloning and transfer of resistance genes in soybean and the breeding of P. sojae-resistant soybean cultivars through marker-assisted selection.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Jiang</LastName>
<ForeName>Bingzhi</ForeName>
<Initials>B</Initials>
<AffiliationInfo><Affiliation>The State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, Guangdong, 510642, People's Republic of China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong, 510642, People's Republic of China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Guangdong Provincial Key Laboratory of Crops Genetics and Improvement, Crops Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, People's Republic of China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Cheng</LastName>
<ForeName>Yanbo</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>The State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, Guangdong, 510642, People's Republic of China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong, 510642, People's Republic of China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Cai</LastName>
<ForeName>Zhandong</ForeName>
<Initials>Z</Initials>
<AffiliationInfo><Affiliation>The State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, Guangdong, 510642, People's Republic of China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong, 510642, People's Republic of China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Mu</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>The State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, Guangdong, 510642, People's Republic of China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong, 510642, People's Republic of China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Jiang</LastName>
<ForeName>Ze</ForeName>
<Initials>Z</Initials>
<AffiliationInfo><Affiliation>The State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, Guangdong, 510642, People's Republic of China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong, 510642, People's Republic of China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ma</LastName>
<ForeName>Ruirui</ForeName>
<Initials>R</Initials>
<AffiliationInfo><Affiliation>The State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, Guangdong, 510642, People's Republic of China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong, 510642, People's Republic of China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yuan</LastName>
<ForeName>Yeshan</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>The State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, Guangdong, 510642, People's Republic of China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong, 510642, People's Republic of China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Xia</LastName>
<ForeName>Qiuju</ForeName>
<Initials>Q</Initials>
<AffiliationInfo><Affiliation>Beijing Genomics Institute (BGI) Education Center, University of Chinese Academy of Sciences, Shenzhen, 518083, People's Republic of China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Nian</LastName>
<ForeName>Hai</ForeName>
<Initials>H</Initials>
<Identifier Source="ORCID">http://orcid.org/0000-0003-0227-2045</Identifier>
<AffiliationInfo><Affiliation>The State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, Guangdong, 510642, People's Republic of China. hnian@scau.edu.cn.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong, 510642, People's Republic of China. hnian@scau.edu.cn.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<GrantList CompleteYN="Y"><Grant><GrantID>2018YFD0201006</GrantID>
<Agency>The National Key R&D Program of China</Agency>
<Country></Country>
</Grant>
<Grant><GrantID>CARS-04-PS09</GrantID>
<Agency>Agriculture Research System of China</Agency>
<Country></Country>
</Grant>
<Grant><GrantID>2019KJ136</GrantID>
<Agency>The Guangdong Agricultural Research System</Agency>
<Country></Country>
</Grant>
<Grant><GrantID>GPKLPMB201905</GrantID>
<Agency>The roject of the Key laboratory of Plant Molecular reeding of Guangdong Province</Agency>
<Country></Country>
</Grant>
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<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
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<ArticleDate DateType="Electronic"><Year>2020</Year>
<Month>04</Month>
<Day>03</Day>
</ArticleDate>
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<MedlineJournalInfo><Country>England</Country>
<MedlineTA>BMC Genomics</MedlineTA>
<NlmUniqueID>100965258</NlmUniqueID>
<ISSNLinking>1471-2164</ISSNLinking>
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<MeshHeadingList><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome Mapping</DescriptorName>
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<MeshHeading><DescriptorName UI="D002876" MajorTopicYN="N">Chromosomes, Bacterial</DescriptorName>
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<MeshHeading><DescriptorName UI="D060467" MajorTopicYN="Y">Disease Resistance</DescriptorName>
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<MeshHeading><DescriptorName UI="D008040" MajorTopicYN="N">Genetic Linkage</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D059014" MajorTopicYN="N">High-Throughput Nucleotide Sequencing</DescriptorName>
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<MeshHeading><DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName>
<QualifierName UI="Q000472" MajorTopicYN="Y">pathogenicity</QualifierName>
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<MeshHeading><DescriptorName UI="D000069600" MajorTopicYN="N">Plant Breeding</DescriptorName>
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<MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName>
<QualifierName UI="Q000469" MajorTopicYN="N">parasitology</QualifierName>
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<MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
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<MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
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<MeshHeading><DescriptorName UI="D013025" MajorTopicYN="N">Soybeans</DescriptorName>
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<Keyword MajorTopicYN="N">Phytophthora root rot</Keyword>
<Keyword MajorTopicYN="N">Resistance locus</Keyword>
<Keyword MajorTopicYN="N">SNP</Keyword>
<Keyword MajorTopicYN="N">Soybean</Keyword>
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<Day>26</Day>
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<PubMedPubDate PubStatus="accepted"><Year>2020</Year>
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<Day>12</Day>
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<affiliations><list><country><li>République populaire de Chine</li>
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<name sortKey="Cai, Zhandong" sort="Cai, Zhandong" uniqKey="Cai Z" first="Zhandong" last="Cai">Zhandong Cai</name>
<name sortKey="Cai, Zhandong" sort="Cai, Zhandong" uniqKey="Cai Z" first="Zhandong" last="Cai">Zhandong Cai</name>
<name sortKey="Cheng, Yanbo" sort="Cheng, Yanbo" uniqKey="Cheng Y" first="Yanbo" last="Cheng">Yanbo Cheng</name>
<name sortKey="Cheng, Yanbo" sort="Cheng, Yanbo" uniqKey="Cheng Y" first="Yanbo" last="Cheng">Yanbo Cheng</name>
<name sortKey="Jiang, Bingzhi" sort="Jiang, Bingzhi" uniqKey="Jiang B" first="Bingzhi" last="Jiang">Bingzhi Jiang</name>
<name sortKey="Jiang, Bingzhi" sort="Jiang, Bingzhi" uniqKey="Jiang B" first="Bingzhi" last="Jiang">Bingzhi Jiang</name>
<name sortKey="Jiang, Ze" sort="Jiang, Ze" uniqKey="Jiang Z" first="Ze" last="Jiang">Ze Jiang</name>
<name sortKey="Jiang, Ze" sort="Jiang, Ze" uniqKey="Jiang Z" first="Ze" last="Jiang">Ze Jiang</name>
<name sortKey="Li, Mu" sort="Li, Mu" uniqKey="Li M" first="Mu" last="Li">Mu Li</name>
<name sortKey="Li, Mu" sort="Li, Mu" uniqKey="Li M" first="Mu" last="Li">Mu Li</name>
<name sortKey="Ma, Ruirui" sort="Ma, Ruirui" uniqKey="Ma R" first="Ruirui" last="Ma">Ruirui Ma</name>
<name sortKey="Ma, Ruirui" sort="Ma, Ruirui" uniqKey="Ma R" first="Ruirui" last="Ma">Ruirui Ma</name>
<name sortKey="Nian, Hai" sort="Nian, Hai" uniqKey="Nian H" first="Hai" last="Nian">Hai Nian</name>
<name sortKey="Nian, Hai" sort="Nian, Hai" uniqKey="Nian H" first="Hai" last="Nian">Hai Nian</name>
<name sortKey="Xia, Qiuju" sort="Xia, Qiuju" uniqKey="Xia Q" first="Qiuju" last="Xia">Qiuju Xia</name>
<name sortKey="Yuan, Yeshan" sort="Yuan, Yeshan" uniqKey="Yuan Y" first="Yeshan" last="Yuan">Yeshan Yuan</name>
<name sortKey="Yuan, Yeshan" sort="Yuan, Yeshan" uniqKey="Yuan Y" first="Yeshan" last="Yuan">Yeshan Yuan</name>
</country>
</tree>
</affiliations>
</record>

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   |wiki=    Bois
   |area=    PhytophthoraV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:32245402
   |texte=   Fine mapping of a Phytophthora-resistance locus RpsGZ in soybean using genotyping-by-sequencing.
}}

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	Serveur d'exploration Phytophthora
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.

Serveur d'exploration Phytophthora

Fine mapping of a Phytophthora-resistance locus RpsGZ in soybean using genotyping-by-sequencing.

Fine mapping of a Phytophthora-resistance locus RpsGZ in soybean using genotyping-by-sequencing.

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